--barplot

Switch

--barplot

Description

Produce correlation barplots.

Argument and Default Value

No argument. Boolean switch, default: False.

Details

Runs the same correlation as --correlate and plots the top features per outcome (5 by default) as a bar chart via rFeaturePlot. Output is written to --output_name if given, otherwise to a generated filename under --output_dir.

Known issue: as of this writing, oa.barPlot() does from rFeaturePlot import FeaturePlotter, but no rFeaturePlot module or FeaturePlotter class exists anywhere in the dlatk package or its declared dependencies. Running --barplot currently always fails with ModuleNotFoundError: No module named 'rFeaturePlot'.

Other Switches

Required Switches:

• --outcomes

• --outcome_table

• -f

• --feat_names

Example Commands