--DDLA

Switch

--DDLA CSV_1 CSV_2

Description

Compares two csv files that came out of --correlate (Differential DLA) — e.g. correlations run separately on two different subsets of your data — and reports which features' correlations changed most between them.

Argument and Default Value

Two csv file paths (nargs=2). Requires both source --correlate runs to have used --csv with the default --show_feat_freqs/--nvalue left on (their values are True by default already).

Details

Known issue — always crashes. dlatkInterface.py does from dlatk import DDLA (importing the module dlatk/DDLA.py) but then calls ddla = DDLA(args.ddlaFiles[0], args.ddlaFiles[1], outputname) as if DDLA were the class of the same name defined inside that module. Verified: running --DDLA on two real csv files fails immediately with TypeError: 'module' object is not callable, before touching either file's contents. There is currently no way to run this switch successfully from the command line.

Other Switches

Required Switches:

• None (flag currently cannot complete successfully — see Known issue above)

Optional Switches:

• --DDLATagcloud (also broken — depends on this switch succeeding first)

Example Commands

Not usable as of this writing — see Known issue above.